Variant report

Variant	rs1204960
Chromosome Location	chr3:158008223-158008224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10470472	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10936132	0.80[ASN][1000 genomes]
rs1095636	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11712563	0.87[ASN][1000 genomes]
rs11717923	0.80[ASN][1000 genomes]
rs11719153	0.89[ASN][1000 genomes]
rs1193511	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1193513	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1193536	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204957	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12053861	0.83[ASN][1000 genomes]
rs12634807	0.83[ASN][1000 genomes]
rs12634832	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12636733	0.87[ASN][1000 genomes]
rs12639261	0.83[ASN][1000 genomes]
rs12639310	0.83[ASN][1000 genomes]
rs1724666	0.83[EUR][1000 genomes]
rs1724679	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1729998	0.83[EUR][1000 genomes]
rs1730008	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1730039	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1730041	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1730099	0.83[EUR][1000 genomes]
rs17683939	0.87[ASN][1000 genomes]
rs1851062	0.86[ASN][1000 genomes]
rs1918000	0.89[ASN][1000 genomes]
rs2139696	0.84[ASN][1000 genomes]
rs2682402	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2682407	0.83[EUR][1000 genomes]
rs2693540	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2693546	0.81[AMR][1000 genomes]
rs34434866	0.83[ASN][1000 genomes]
rs4680425	0.81[ASN][1000 genomes]
rs4680428	0.80[ASN][1000 genomes]
rs58195752	0.80[ASN][1000 genomes]
rs58925169	0.83[ASN][1000 genomes]
rs6772246	0.80[ASN][1000 genomes]
rs6784968	0.86[ASN][1000 genomes]
rs6800853	0.83[ASN][1000 genomes]
rs6807468	0.83[ASN][1000 genomes]
rs696715	0.83[EUR][1000 genomes]
rs698975	0.82[EUR][1000 genomes]
rs698976	0.83[EUR][1000 genomes]
rs698977	0.83[EUR][1000 genomes]
rs698979	0.83[EUR][1000 genomes]
rs698981	0.83[EUR][1000 genomes]
rs698982	0.83[EUR][1000 genomes]
rs698983	0.83[EUR][1000 genomes]
rs698984	0.81[EUR][1000 genomes]
rs698985	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs698992	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs699918	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs699923	0.83[EUR][1000 genomes]
rs699925	0.84[EUR][1000 genomes]
rs699926	0.83[EUR][1000 genomes]
rs73166358	0.86[ASN][1000 genomes]
rs73168723	0.87[ASN][1000 genomes]
rs73168799	0.85[ASN][1000 genomes]
rs73170303	0.85[ASN][1000 genomes]
rs73170306	0.85[ASN][1000 genomes]
rs73170310	0.80[ASN][1000 genomes]
rs73170326	0.80[ASN][1000 genomes]
rs73170337	0.83[ASN][1000 genomes]
rs73170339	0.83[ASN][1000 genomes]
rs73170346	0.83[ASN][1000 genomes]
rs73170364	0.83[ASN][1000 genomes]
rs7618071	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs827104	0.83[EUR][1000 genomes]
rs827130	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs827139	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827141	0.81[EUR][1000 genomes]
rs827142	0.81[EUR][1000 genomes]
rs827145	0.81[EUR][1000 genomes]
rs827146	0.83[EUR][1000 genomes]
rs827147	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs827162	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs827168	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs827170	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827173	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs827174	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827801	0.81[EUR][1000 genomes]
rs866657	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157986400-158040000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:157988200-158009600	Weak transcription	Pancreas	Pancrea
3	chr3:157993400-158054600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:157993800-158040600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:157998000-158023400	Weak transcription	Primary monocytes fromperipheralblood	blood

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