Variant report

Variant	rs1204977
Chromosome Location	chr14:72222398-72222399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1204965	1.00[AMR][1000 genomes]
rs1204968	1.00[AMR][1000 genomes]
rs1204974	0.85[AFR][1000 genomes]
rs1204979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1212575	1.00[AMR][1000 genomes]
rs2096449	1.00[AMR][1000 genomes]
rs2802574	1.00[AMR][1000 genomes]
rs2802575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1047559	chr14:72151736-72282151	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72219800-72224600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72220400-72223000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:72220600-72231400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:72221000-72222400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:72221000-72222400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:72221000-72222400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr14:72221000-72223600	Weak transcription	Hela-S3	cervix
8	chr14:72221200-72222400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:72221200-72222400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:72221400-72222400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:72221400-72224200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:72221600-72243200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:72221800-72225400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:72221800-72230000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:72222000-72224200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:72222200-72222400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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