Variant report
Variant | rs12050456 |
---|---|
Chromosome Location | chr14:66851873-66851874 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1009294 | 0.82[ASN][1000 genomes] |
rs1010965 | 0.84[ASN][1000 genomes] |
rs10129809 | 0.80[ASN][1000 genomes] |
rs10130239 | 0.80[ASN][1000 genomes] |
rs10132669 | 0.80[ASN][1000 genomes] |
rs10133818 | 0.82[ASN][1000 genomes] |
rs10134043 | 0.80[ASN][1000 genomes] |
rs10134064 | 0.82[ASN][1000 genomes] |
rs10134088 | 0.80[ASN][1000 genomes] |
rs10134278 | 0.84[ASN][1000 genomes] |
rs10134424 | 0.80[ASN][1000 genomes] |
rs10135880 | 0.84[ASN][1000 genomes] |
rs10138005 | 0.80[ASN][1000 genomes] |
rs10138505 | 0.80[ASN][1000 genomes] |
rs10139656 | 0.80[ASN][1000 genomes] |
rs10141750 | 0.80[ASN][1000 genomes] |
rs10141991 | 0.80[ASN][1000 genomes] |
rs10142124 | 0.86[ASN][1000 genomes] |
rs10142143 | 0.84[ASN][1000 genomes] |
rs10142195 | 0.84[ASN][1000 genomes] |
rs10142375 | 0.86[ASN][1000 genomes] |
rs10142537 | 0.80[ASN][1000 genomes] |
rs10146361 | 0.84[ASN][1000 genomes] |
rs10148021 | 0.84[ASN][1000 genomes] |
rs10148290 | 0.80[ASN][1000 genomes] |
rs10149072 | 0.84[ASN][1000 genomes] |
rs10149639 | 0.82[ASN][1000 genomes] |
rs10149642 | 0.82[ASN][1000 genomes] |
rs10151844 | 0.84[ASN][1000 genomes] |
rs10152053 | 0.84[ASN][1000 genomes] |
rs10220636 | 0.81[ASN][1000 genomes] |
rs11158625 | 0.81[ASN][1000 genomes] |
rs12586868 | 0.89[ASN][1000 genomes] |
rs12587051 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12588173 | 0.84[ASN][1000 genomes] |
rs12588449 | 0.84[ASN][1000 genomes] |
rs12588933 | 0.84[ASN][1000 genomes] |
rs12589479 | 0.84[ASN][1000 genomes] |
rs12590545 | 0.84[ASN][1000 genomes] |
rs13353130 | 0.84[ASN][1000 genomes] |
rs1379414 | 0.84[ASN][1000 genomes] |
rs1379416 | 0.84[ASN][1000 genomes] |
rs1457425 | 0.86[ASN][1000 genomes] |
rs1457426 | 0.86[ASN][1000 genomes] |
rs1457427 | 0.86[ASN][1000 genomes] |
rs1457428 | 0.87[ASN][1000 genomes] |
rs1457429 | 0.84[ASN][1000 genomes] |
rs1457430 | 0.84[ASN][1000 genomes] |
rs1457431 | 0.84[ASN][1000 genomes] |
rs1457432 | 0.84[ASN][1000 genomes] |
rs1457433 | 0.84[ASN][1000 genomes] |
rs1457434 | 0.85[ASN][1000 genomes] |
rs1457437 | 0.83[ASN][1000 genomes] |
rs1457439 | 0.85[ASN][1000 genomes] |
rs1598772 | 0.85[ASN][1000 genomes] |
rs17103525 | 0.81[ASN][1000 genomes] |
rs17827222 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs17827252 | 0.89[ASN][1000 genomes] |
rs17827349 | 0.84[ASN][1000 genomes] |
rs17827523 | 0.83[ASN][1000 genomes] |
rs17827614 | 0.80[ASN][1000 genomes] |
rs1902644 | 0.84[ASN][1000 genomes] |
rs1959672 | 0.84[ASN][1000 genomes] |
rs1993478 | 0.82[ASN][1000 genomes] |
rs2085482 | 0.84[ASN][1000 genomes] |
rs2319184 | 0.96[ASN][1000 genomes] |
rs2319185 | 0.85[ASN][1000 genomes] |
rs28379778 | 0.80[ASN][1000 genomes] |
rs28408630 | 0.84[ASN][1000 genomes] |
rs28610294 | 0.80[ASN][1000 genomes] |
rs28772914 | 0.84[ASN][1000 genomes] |
rs28802324 | 0.84[ASN][1000 genomes] |
rs3742853 | 0.84[ASN][1000 genomes] |
rs4600407 | 0.84[ASN][1000 genomes] |
rs6573666 | 0.84[ASN][1000 genomes] |
rs6573667 | 0.86[ASN][1000 genomes] |
rs6573668 | 0.84[ASN][1000 genomes] |
rs6573669 | 0.84[ASN][1000 genomes] |
rs6573670 | 0.86[ASN][1000 genomes] |
rs6573671 | 0.84[ASN][1000 genomes] |
rs6573673 | 0.81[ASN][1000 genomes] |
rs6573674 | 0.82[ASN][1000 genomes] |
rs7141089 | 0.85[ASN][1000 genomes] |
rs7141225 | 0.82[ASN][1000 genomes] |
rs7142154 | 0.80[ASN][1000 genomes] |
rs7147360 | 0.80[ASN][1000 genomes] |
rs7149488 | 0.84[ASN][1000 genomes] |
rs7149651 | 0.84[ASN][1000 genomes] |
rs7150098 | 0.84[ASN][1000 genomes] |
rs7150418 | 0.84[ASN][1000 genomes] |
rs7150773 | 0.89[ASN][1000 genomes] |
rs7151102 | 0.84[ASN][1000 genomes] |
rs7156467 | 0.80[ASN][1000 genomes] |
rs7157043 | 0.80[ASN][1000 genomes] |
rs7157060 | 0.80[ASN][1000 genomes] |
rs7157879 | 0.80[ASN][1000 genomes] |
rs7158075 | 0.82[ASN][1000 genomes] |
rs7158262 | 0.84[ASN][1000 genomes] |
rs7159194 | 0.80[ASN][1000 genomes] |
rs7159364 | 0.84[ASN][1000 genomes] |
rs7159681 | 0.84[ASN][1000 genomes] |
rs7159750 | 0.84[ASN][1000 genomes] |
rs7160107 | 0.84[ASN][1000 genomes] |
rs7160696 | 0.84[ASN][1000 genomes] |
rs716232 | 0.84[ASN][1000 genomes] |
rs716233 | 0.84[ASN][1000 genomes] |
rs716234 | 0.84[ASN][1000 genomes] |
rs73273971 | 0.84[ASN][1000 genomes] |
rs73281649 | 0.81[ASN][1000 genomes] |
rs7359115 | 0.84[ASN][1000 genomes] |
rs735957 | 0.84[ASN][1000 genomes] |
rs8004227 | 0.84[ASN][1000 genomes] |
rs8004856 | 0.89[ASN][1000 genomes] |
rs8005737 | 0.85[ASN][1000 genomes] |
rs8007262 | 0.84[ASN][1000 genomes] |
rs8007305 | 0.84[ASN][1000 genomes] |
rs8009108 | 0.84[ASN][1000 genomes] |
rs8009338 | 0.82[ASN][1000 genomes] |
rs8009415 | 0.86[ASN][1000 genomes] |
rs8011794 | 0.82[ASN][1000 genomes] |
rs8012374 | 0.82[ASN][1000 genomes] |
rs8012649 | 0.86[ASN][1000 genomes] |
rs8013806 | 0.84[ASN][1000 genomes] |
rs8015155 | 0.84[ASN][1000 genomes] |
rs8018685 | 0.84[ASN][1000 genomes] |
rs8019603 | 0.82[ASN][1000 genomes] |
rs8020024 | 0.86[ASN][1000 genomes] |
rs8020115 | 0.84[ASN][1000 genomes] |
rs8020532 | 0.84[ASN][1000 genomes] |
rs8021204 | 0.84[ASN][1000 genomes] |
rs8181963 | 0.84[ASN][1000 genomes] |
rs8181967 | 0.84[ASN][1000 genomes] |
rs9332388 | 0.82[ASN][1000 genomes] |
rs9630390 | 0.80[ASN][1000 genomes] |
rs9635252 | 0.84[ASN][1000 genomes] |
rs9635253 | 0.84[ASN][1000 genomes] |
rs9652292 | 0.83[ASN][1000 genomes] |
rs9944086 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817409 | chr14:66220075-66990168 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
2 | nsv564953 | chr14:66287921-67046960 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
3 | nsv1050485 | chr14:66308283-67109270 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
4 | nsv530775 | chr14:66316836-67079049 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
5 | nsv530793 | chr14:66317036-67078908 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
6 | esv3385263 | chr14:66514718-67511481 | ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
7 | nsv983837 | chr14:66619600-67014519 | Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
8 | nsv933275 | chr14:66649843-67024881 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
9 | nsv1054056 | chr14:66848234-66946135 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
10 | nsv525460 | chr14:66851185-67626594 | Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:66846800-66855400 | Weak transcription | Esophagus | oesophagus |
2 | chr14:66850600-66852000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
3 | chr14:66850600-66861800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
4 | chr14:66851000-66852200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |