Variant report

Variant	rs12053103
Chromosome Location	chr2:59540594-59540595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11125778	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13017760	0.82[ASN][1000 genomes]
rs34447805	0.87[ASN][1000 genomes]
rs36164224	0.81[ASN][1000 genomes]
rs62148582	0.84[EUR][1000 genomes]
rs6713914	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6727119	0.84[EUR][1000 genomes]
rs7588177	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv582099	chr2:59494725-59563744	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1003668	chr2:59523642-59592144	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59539000-59541400	Enhancers	Dnd41	blood
2	chr2:59539800-59541400	Enhancers	Primary T cells from cord blood	blood
3	chr2:59539800-59542400	Enhancers	Fetal Thymus	thymus
4	chr2:59540200-59540800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:59540200-59542200	Enhancers	Fetal Brain Male	brain
6	chr2:59540200-59542800	Enhancers	Thymus	Thymus
7	chr2:59540400-59541000	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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