Variant report

Variant	rs12053862
Chromosome Location	chr3:110481667-110481668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10934063	0.83[EUR][1000 genomes]
rs10934064	0.83[EUR][1000 genomes]
rs11925026	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12053901	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1462295	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57198450	0.88[EUR][1000 genomes]
rs57680282	0.83[EUR][1000 genomes]
rs59612531	0.88[EUR][1000 genomes]
rs60302938	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62270060	0.83[EUR][1000 genomes]
rs62270063	0.83[EUR][1000 genomes]
rs62270076	0.83[EUR][1000 genomes]
rs62270083	0.83[EUR][1000 genomes]
rs62270086	0.83[EUR][1000 genomes]
rs62270095	0.83[EUR][1000 genomes]
rs62270100	0.83[EUR][1000 genomes]
rs62270121	0.83[EUR][1000 genomes]
rs62270122	0.83[EUR][1000 genomes]
rs62270123	0.83[EUR][1000 genomes]
rs62270124	0.88[EUR][1000 genomes]
rs62270127	0.83[EUR][1000 genomes]
rs62270128	0.88[EUR][1000 genomes]
rs62270130	0.83[EUR][1000 genomes]
rs62270134	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62271639	0.83[EUR][1000 genomes]
rs62271642	0.83[EUR][1000 genomes]
rs62271644	0.83[EUR][1000 genomes]
rs62271647	0.83[EUR][1000 genomes]
rs62271763	0.83[EUR][1000 genomes]
rs62271766	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271784	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271785	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271788	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62271789	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62271790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772035	0.83[EUR][1000 genomes]
rs6776067	0.83[EUR][1000 genomes]
rs7609852	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7611823	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7618299	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7629179	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7632974	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs7640442	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7641379	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7650722	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9653909	0.83[EUR][1000 genomes]
rs9825259	1.00[CEU][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs9858359	0.83[EUR][1000 genomes]
rs9873714	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110471400-110492200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:110472600-110492400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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