Variant report

Variant	rs12054011
Chromosome Location	chr3:69229976-69229977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11917364	0.95[ASN][1000 genomes]
rs4241385	0.95[ASN][1000 genomes]
rs4513455	1.00[CHB][hapmap]
rs4855359	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4855362	0.93[ASN][1000 genomes]
rs6776230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6809451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs73835781	0.93[ASN][1000 genomes]
rs73835783	0.90[ASN][1000 genomes]
rs9310141	1.00[MEX][hapmap]
rs9818314	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9820998	1.00[CHB][hapmap]
rs9868107	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69211600-69230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:69211600-69231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:69214800-69230400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:69217200-69230200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:69217600-69230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:69218400-69230000	Weak transcription	Hela-S3	cervix
7	chr3:69218400-69247400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:69218400-69247800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:69219200-69230000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:69219800-69230800	Strong transcription	Placenta	Placenta
11	chr3:69220800-69231600	Weak transcription	Psoas Muscle	Psoas
12	chr3:69221000-69230000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:69222800-69237400	Strong transcription	Dnd41	blood
14	chr3:69222800-69245400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:69223400-69232600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr3:69223400-69237600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr3:69224200-69230400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:69224400-69230400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:69224400-69230600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:69224400-69237400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:69225200-69232600	Strong transcription	Fetal Brain Female	brain
22	chr3:69225600-69230000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:69225600-69233200	Strong transcription	Fetal Stomach	stomach
24	chr3:69225800-69230000	Weak transcription	Ovary	ovary
25	chr3:69225800-69230000	Weak transcription	HSMMtube	muscle
26	chr3:69225800-69230600	Weak transcription	NHLF	lung
27	chr3:69226600-69230400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:69226600-69230600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:69226600-69232000	Strong transcription	Brain Germinal Matrix	brain
30	chr3:69226600-69232600	Genic enhancers	Fetal Intestine Small	intestine
31	chr3:69226800-69232600	Genic enhancers	Brain Substantia Nigra	brain
32	chr3:69226800-69233400	Genic enhancers	HUVEC	blood vessel
33	chr3:69226800-69246800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr3:69227000-69230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:69227000-69230800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:69227000-69230800	Genic enhancers	Brain Cingulate Gyrus	brain
37	chr3:69227000-69232600	Strong transcription	Thymus	Thymus
38	chr3:69227400-69232200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:69227600-69231000	Strong transcription	Spleen	Spleen
40	chr3:69228000-69231000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:69228200-69230000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:69228200-69230600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:69228400-69230600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:69228400-69230600	Strong transcription	Rectal Smooth Muscle	rectum
45	chr3:69228400-69230800	Strong transcription	Adipose Nuclei	Adipose
46	chr3:69228400-69231800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr3:69228400-69246800	Weak transcription	Primary T cells from cord blood	blood
48	chr3:69228600-69230000	Weak transcription	Colonic Mucosa	Colon
49	chr3:69228600-69230000	Weak transcription	Pancreas	Pancrea
50	chr3:69228600-69230200	Weak transcription	Right Atrium	heart

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