Variant report

Variant	rs12054108
Chromosome Location	chr3:34254087-34254088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56032332	0.92[ASN][1000 genomes]
rs56106035	0.91[ASN][1000 genomes]
rs56302682	0.93[ASN][1000 genomes]
rs6550259	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6780603	0.96[ASN][1000 genomes]
rs6784859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6808824	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9311048	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985312	0.89[ASN][1000 genomes]
rs9985381	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34244000-34255000	Weak transcription	Right Atrium	heart
2	chr3:34250000-34254200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:34252600-34255400	Enhancers	HUVEC	blood vessel
4	chr3:34253200-34255200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:34253400-34254200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:34253400-34254200	Enhancers	Stomach Mucosa	stomach
7	chr3:34253400-34255200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:34253400-34255400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:34253400-34257200	Enhancers	Fetal Intestine Small	intestine
10	chr3:34253600-34254200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:34253600-34254400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:34253600-34254400	Enhancers	Fetal Muscle Leg	muscle
13	chr3:34253600-34254600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr3:34253600-34255000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:34253600-34255400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:34253600-34255600	Enhancers	Fetal Intestine Large	intestine
17	chr3:34253800-34254400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:34253800-34254800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:34253800-34255000	Weak transcription	Brain Angular Gyrus	brain
20	chr3:34254000-34254800	Enhancers	Adipose Nuclei	Adipose
21	chr3:34254000-34255000	Weak transcription	Aorta	Aorta
22	chr3:34254000-34257800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:34254000-34258400	Weak transcription	Primary hematopoietic stem cells	blood

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