Variant report

Variant	rs12055145
Chromosome Location	chr5:92496410-92496411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92492798..92494347-chr5:92496334..92499006,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10463178	0.88[ASN][1000 genomes]
rs10463226	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10514372	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10514373	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11135563	0.85[ASN][1000 genomes]
rs11135565	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11747478	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13161302	0.92[ASN][1000 genomes]
rs13163742	0.86[ASN][1000 genomes]
rs13185751	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13188341	0.86[ASN][1000 genomes]
rs1353492	0.86[ASN][1000 genomes]
rs1353493	0.86[ASN][1000 genomes]
rs1353494	0.86[ASN][1000 genomes]
rs1496333	0.81[ASN][1000 genomes]
rs1496334	0.81[ASN][1000 genomes]
rs17082892	0.83[JPT][hapmap]
rs1908713	0.86[ASN][1000 genomes]
rs28865023	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34165396	0.88[ASN][1000 genomes]
rs34262922	0.90[ASN][1000 genomes]
rs35117985	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35527617	0.88[ASN][1000 genomes]
rs4305632	0.93[ASN][1000 genomes]
rs4309956	0.92[ASN][1000 genomes]
rs4485910	0.89[ASN][1000 genomes]
rs4502796	0.89[ASN][1000 genomes]
rs4869414	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62366831	0.88[ASN][1000 genomes]
rs6875964	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92486600-92498200	Weak transcription	Aorta	Aorta
2	chr5:92494000-92498200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:92494800-92496600	Weak transcription	Fetal Kidney	kidney
4	chr5:92494800-92497600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:92494800-92498200	Weak transcription	Right Atrium	heart
6	chr5:92495000-92496600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:92495000-92496600	Weak transcription	NHLF	lung
8	chr5:92495000-92497000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:92495000-92497000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:92495000-92497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:92495000-92497000	Weak transcription	NH-A	brain
12	chr5:92495000-92497400	Weak transcription	NHEK	skin
13	chr5:92495000-92498000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:92495200-92497000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:92495200-92497000	Weak transcription	Adipose Nuclei	Adipose
16	chr5:92495200-92498000	Weak transcription	HSMMtube	muscle
17	chr5:92495800-92496800	Weak transcription	NHDF-Ad	bronchial
18	chr5:92496000-92498200	Enhancers	HSMM	muscle
19	chr5:92496200-92498000	Enhancers	Osteobl	bone
20	chr5:92496200-92498600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr5:92496400-92497200	Enhancers	Colon Smooth Muscle	Colon
22	chr5:92496400-92497400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr5:92496400-92497600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:92496400-92497600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:92496400-92497600	Enhancers	Stomach Smooth Muscle	stomach
26	chr5:92496400-92498600	Enhancers	Fetal Stomach	stomach
27	chr5:92496400-92500800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:92496400-92500800	Enhancers	HMEC	breast

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