Variant report

Variant	rs12055620
Chromosome Location	chr6:36715475-36715476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36713858..36716285-chr6:36724983..36726678,2	MCF-7	breast:
2	chr6:36714240..36716919-chr6:36719945..36722727,5	MCF-7	breast:
3	chr6:36706791..36710785-chr6:36712838..36716064,4	MCF-7	breast:
4	chr6:36708918..36710565-chr6:36712727..36715586,2	K562	blood:

Variant related genes	Relation type
ENSG00000124772	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11755091	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs11757521	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11757761	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11760163	0.85[EUR][1000 genomes]
rs12524933	0.92[EUR][1000 genomes]
rs16889055	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs59022372	0.81[ASN][1000 genomes]
rs72855081	0.95[EUR][1000 genomes]
rs7756867	0.83[JPT][hapmap]
rs916296	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs916298	0.85[EUR][1000 genomes]
rs916299	0.85[EUR][1000 genomes]
rs916300	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs916301	0.83[EUR][1000 genomes]
rs916302	0.81[EUR][1000 genomes]
rs9380590	0.82[JPT][hapmap]
rs9380592	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv885811	chr6:36695223-36719079	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	nsv885814	chr6:36704807-36722842	Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
10	nsv602951	chr6:36706157-36719079	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36703400-36718000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:36703800-36718000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:36704000-36718000	Weak transcription	Right Atrium	heart
4	chr6:36704000-36720400	Weak transcription	Right Ventricle	heart
5	chr6:36708400-36720800	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr6:36709200-36727000	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:36710200-36715600	Weak transcription	Fetal Brain Female	brain
8	chr6:36711800-36716200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:36711800-36719800	Weak transcription	Gastric	stomach
10	chr6:36712400-36716000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:36712400-36718400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:36712600-36719000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:36713400-36715800	Weak transcription	Spleen	Spleen
14	chr6:36713400-36716400	Strong transcription	Primary B cells from cord blood	blood
15	chr6:36713400-36718800	Weak transcription	Colonic Mucosa	Colon
16	chr6:36713600-36717600	Weak transcription	Stomach Mucosa	stomach
17	chr6:36713800-36718000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:36714200-36715600	Weak transcription	Fetal Stomach	stomach
19	chr6:36714600-36716200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:36715000-36718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:36715400-36716200	Weak transcription	Fetal Muscle Trunk	muscle

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