Variant report

Variant	rs12055766
Chromosome Location	chr6:128600320-128600321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128599481..128601145-chr6:128840998..128842623,2	MCF-7	breast:
2	chr6:128598470..128600441-chr6:128838939..128840470,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1339191	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs1339193	0.89[JPT][hapmap]
rs1339197	0.83[CHB][hapmap]
rs17055559	0.83[AMR][1000 genomes]
rs4296904	0.89[JPT][hapmap]
rs6934873	0.80[JPT][hapmap]
rs7744436	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.80[ASN][1000 genomes]
rs9321115	0.80[ASN][1000 genomes]
rs9372889	0.83[JPT][hapmap]
rs9385457	0.90[JPT][hapmap]
rs9388629	0.83[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap]
rs9402033	0.92[ASN][1000 genomes]
rs9491939	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs953549	0.90[JPT][hapmap]
rs964179	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128585200-128617600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:128586400-128602000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:128587600-128602200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:128588000-128608200	Weak transcription	Aorta	Aorta
5	chr6:128592800-128602200	Weak transcription	Psoas Muscle	Psoas
6	chr6:128592800-128605200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:128593000-128603200	Weak transcription	Stomach Mucosa	stomach
8	chr6:128593000-128609000	Weak transcription	Fetal Lung	lung
9	chr6:128593000-128631600	Weak transcription	Left Ventricle	heart
10	chr6:128594200-128601000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:128595800-128608800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:128596600-128608800	Weak transcription	NH-A	brain
13	chr6:128596800-128602800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:128596800-128607400	Weak transcription	HSMMtube	muscle
15	chr6:128596800-128623600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:128597800-128625000	Weak transcription	HSMM	muscle
17	chr6:128598200-128600400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:128598200-128613800	Weak transcription	HUVEC	blood vessel
19	chr6:128598600-128602600	Weak transcription	Fetal Stomach	stomach
20	chr6:128598600-128621200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:128598800-128604200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:128598800-128605200	Weak transcription	Brain Substantia Nigra	brain
23	chr6:128598800-128612400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:128599000-128602200	Weak transcription	HepG2	liver
25	chr6:128599200-128601600	Weak transcription	Liver	Liver
26	chr6:128600000-128600800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:128600000-128600800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:128600000-128601200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr6:128600000-128601400	Enhancers	Small Intestine	intestine
30	chr6:128600000-128601600	Enhancers	Fetal Heart	heart
31	chr6:128600200-128605000	Weak transcription	Ovary	ovary
32	chr6:128600200-128606800	Weak transcription	Right Atrium	heart

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