Variant report

Variant	rs12057381
Chromosome Location	chr1:57769516-57769517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59285318	1.00[EUR][1000 genomes]
rs6697460	1.00[EUR][1000 genomes]
rs74074905	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57751600-57770600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57767200-57769800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:57767200-57771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:57767800-57770600	Weak transcription	Fetal Intestine Small	intestine
5	chr1:57768400-57769800	Enhancers	Fetal Heart	heart
6	chr1:57769000-57770000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:57769000-57770000	Enhancers	Fetal Brain Male	brain
8	chr1:57769000-57770600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:57769000-57770800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:57769200-57770200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:57769200-57770400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:57769200-57770400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:57769400-57770000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:57769400-57770400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:57769400-57770400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:57769400-57770400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:57769400-57770400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:57769400-57770400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:57769400-57770800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:57769400-57771200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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