Variant report

Variant	rs12057743
Chromosome Location	chr1:150210306-150210307
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:150209922-150210453	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr1:150210220-150210370	GM12867	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150039411..150040952-chr1:150209636..150212635,2	K562	blood:
2	chr1:150203436..150211066-chr1:150333611..150339492,20	K562	blood:
3	chr1:150207085..150210384-chr1:150292615..150294360,3	K562	blood:
4	chr1:150206250..150210524-chr1:150335148..150338813,9	MCF-7	breast:
5	chr1:150205879..150210456-chr1:150251557..150256195,8	MCF-7	breast:
6	chr1:149857476..149860799-chr1:150206355..150210783,8	K562	blood:
7	chr1:150207682..150210552-chr1:150291812..150294121,3	K562	blood:
8	chr1:150198495..150205043-chr1:150206226..150211170,11	MCF-7	breast:
9	chr1:150209725..150211414-chr1:150230060..150232543,2	K562	blood:
10	chr1:150209914..150212517-chr1:150228634..150232834,3	K562	blood:
11	chr1:150205053..150211036-chr1:150333116..150338498,15	K562	blood:
12	chr1:150206579..150210456-chr1:150238390..150242863,9	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ANP32E	TF binding region
ENSG00000118292	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000271845	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000117362	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000117360	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000118298	Chromatin interaction
ENSG00000163125	Chromatin interaction
ENSG00000184270	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12060797	0.87[AFR][1000 genomes]
rs12063159	1.00[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs13375906	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	esv3452492	chr1:150210095-150211365	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	esv3452493	chr1:150210095-150211365	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150209000-150212000	Weak transcription	Lung	lung
2	chr1:150209200-150215400	Weak transcription	Right Atrium	heart
3	chr1:150209400-150210400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:150209400-150212000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:150209600-150210400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:150209600-150212000	Weak transcription	HepG2	liver
7	chr1:150209600-150212200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:150209600-150212400	Weak transcription	GM12878-XiMat	blood
9	chr1:150210000-150214800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:150210200-150210400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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