Variant report

Variant	rs12059587
Chromosome Location	chr1:10187860-10187861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12407506	1.00[MEX][hapmap]
rs12737841	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv527217	chr1:10093457-10257167	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv522629	chr1:10125765-10239197	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10145400-10189600	Weak transcription	Psoas Muscle	Psoas
2	chr1:10145800-10197000	Weak transcription	Stomach Mucosa	stomach
3	chr1:10163400-10219000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:10164000-10227400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:10167400-10188400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:10167400-10192600	Weak transcription	Small Intestine	intestine
7	chr1:10167600-10190400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:10167600-10207400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:10169400-10195000	Weak transcription	Aorta	Aorta
10	chr1:10172000-10188200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:10173000-10199400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr1:10175000-10207200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:10179800-10188400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:10179800-10189400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:10179800-10190600	Weak transcription	Gastric	stomach
16	chr1:10179800-10190800	Weak transcription	NHLF	lung
17	chr1:10180000-10188200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:10180000-10188200	Weak transcription	Colonic Mucosa	Colon
19	chr1:10180000-10211200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:10181000-10199600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:10182000-10188200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:10182200-10189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:10182200-10231200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:10182400-10188000	Weak transcription	Fetal Kidney	kidney
25	chr1:10182400-10188200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:10182400-10188200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:10182400-10188400	Weak transcription	Esophagus	oesophagus
28	chr1:10182400-10188400	Weak transcription	Pancreas	Pancrea
29	chr1:10182400-10188600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:10182400-10190400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:10182400-10190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:10182400-10229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:10182600-10188200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:10182600-10190400	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:10182600-10190600	Weak transcription	HMEC	breast
36	chr1:10182800-10188000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:10182800-10188200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:10182800-10188400	Weak transcription	Spleen	Spleen
39	chr1:10182800-10189400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:10182800-10190800	Weak transcription	NH-A	brain
41	chr1:10182800-10211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:10182800-10221000	Weak transcription	Fetal Brain Male	brain
43	chr1:10182800-10231400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr1:10183000-10188800	Weak transcription	Fetal Heart	heart
45	chr1:10183200-10188200	Weak transcription	Brain Anterior Caudate	brain
46	chr1:10183200-10189200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr1:10183400-10188000	Weak transcription	Brain Germinal Matrix	brain
48	chr1:10183400-10189400	Weak transcription	Right Ventricle	heart
49	chr1:10183600-10188400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr1:10183800-10188000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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