Variant report

Variant	rs1206032
Chromosome Location	chr19:42871296-42871297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42865401..42867644-chr19:42869322..42871775,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3826706	0.88[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
6	nsv911785	chr19:42741124-42917545	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42830800-42879200	Weak transcription	Small Intestine	intestine
2	chr19:42830800-42884200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr19:42831000-42874400	Weak transcription	HSMM	muscle
4	chr19:42831600-42882600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr19:42831800-42873800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr19:42831800-42874800	Weak transcription	K562	blood
7	chr19:42844800-42877400	Weak transcription	Stomach Mucosa	stomach
8	chr19:42857800-42874000	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr19:42858200-42872200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:42862400-42873800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:42862600-42878800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr19:42863600-42874800	Weak transcription	HUVEC	blood vessel
13	chr19:42865200-42873800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:42866600-42871600	Enhancers	Primary B cells from peripheral blood	blood
15	chr19:42868400-42871600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr19:42868400-42873800	Weak transcription	Placenta	Placenta
17	chr19:42868400-42874000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:42868400-42874400	Strong transcription	Fetal Intestine Small	intestine
19	chr19:42868400-42874800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr19:42868400-42874800	Weak transcription	NHLF	lung
21	chr19:42868400-42874800	Weak transcription	Osteobl	bone
22	chr19:42868400-42876200	Weak transcription	Lung	lung
23	chr19:42868400-42879200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr19:42868400-42881400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr19:42868400-42882400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr19:42868600-42873600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr19:42868600-42873800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr19:42868600-42873800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr19:42868600-42874000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr19:42868600-42878800	Weak transcription	Esophagus	oesophagus
31	chr19:42868600-42878800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr19:42868600-42879000	Weak transcription	Aorta	Aorta
33	chr19:42868600-42882600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr19:42868800-42871400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr19:42868800-42871800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr19:42868800-42872400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr19:42868800-42872400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr19:42868800-42873400	Weak transcription	Fetal Lung	lung
39	chr19:42868800-42874800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr19:42868800-42874800	Weak transcription	NH-A	brain
41	chr19:42868800-42874800	Weak transcription	NHEK	skin
42	chr19:42868800-42878800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr19:42868800-42878800	Weak transcription	Gastric	stomach
44	chr19:42868800-42878800	Weak transcription	Thymus	Thymus
45	chr19:42868800-42878800	Weak transcription	Dnd41	blood
46	chr19:42868800-42880800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr19:42868800-42882000	Strong transcription	Fetal Stomach	stomach
48	chr19:42869000-42871400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr19:42869000-42872200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr19:42869000-42872200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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