Variant report

Variant	rs12060625
Chromosome Location	chr1:76814277-76814278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11162121	0.80[JPT][hapmap]
rs11162126	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12071740	0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs12075208	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs12076310	0.83[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs1325286	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17627490	0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs17627816	0.82[CHB][hapmap]
rs17672913	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4949629	0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs4949706	0.80[JPT][hapmap]
rs4949710	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76780600-76817200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76803600-76817400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:76803600-76817400	Weak transcription	Brain Anterior Caudate	brain
4	chr1:76803800-76817600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:76809400-76818800	Weak transcription	Gastric	stomach
6	chr1:76810400-76814400	Weak transcription	Primary T cells from cord blood	blood
7	chr1:76811400-76822800	Weak transcription	Fetal Stomach	stomach
8	chr1:76814200-76814600	Enhancers	Fetal Brain Male	brain
9	chr1:76814200-76817600	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links