Variant report

Variant	rs12061893
Chromosome Location	chr1:171114298-171114299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10399740	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10912500	1.00[AMR][1000 genomes]
rs10912599	1.00[AMR][1000 genomes]
rs10912623	1.00[AMR][1000 genomes]
rs12066832	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070707	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12071161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12072582	0.90[AFR][1000 genomes]
rs12073562	0.90[AFR][1000 genomes]
rs12075699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12085769	1.00[AMR][1000 genomes]
rs56910253	1.00[AMR][1000 genomes]
rs6656513	1.00[AMR][1000 genomes]
rs6689816	1.00[AMR][1000 genomes]
rs6701657	1.00[AMR][1000 genomes]
rs73028643	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032550	1.00[AMR][1000 genomes]
rs73032556	1.00[AMR][1000 genomes]
rs73032574	1.00[AMR][1000 genomes]
rs73032600	1.00[AMR][1000 genomes]
rs73034309	1.00[AMR][1000 genomes]
rs7552423	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7883579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171110800-171114600	Enhancers	Fetal Lung	lung
2	chr1:171112200-171120600	Weak transcription	Fetal Kidney	kidney
3	chr1:171112400-171121800	Weak transcription	Aorta	Aorta
4	chr1:171112800-171118400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:171112800-171121000	Weak transcription	Psoas Muscle	Psoas
6	chr1:171113200-171114400	Weak transcription	Stomach Mucosa	stomach
7	chr1:171113200-171114600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links