Variant report

Variant	rs12062278
Chromosome Location	chr1:94048153-94048154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94046974..94050616-chr1:94310637..94313716,4	MCF-7	breast:
2	chr1:94040725..94043300-chr1:94045336..94048805,3	K562	blood:
3	chr1:94043354..94045487-chr1:94047410..94050029,2	K562	blood:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction
ENSG00000260464	Chromatin interaction
ENSG00000211575	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12059142	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093585	1.00[AMR][1000 genomes]
rs12093959	1.00[AMR][1000 genomes]
rs12094668	1.00[MEX][hapmap]
rs6681200	1.00[MEX][hapmap]
rs6697077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963327	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963332	1.00[AMR][1000 genomes]
rs72963341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482370	chr1:94000799-94183692	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94020800-94050600	Weak transcription	Fetal Thymus	thymus
2	chr1:94025400-94049400	Strong transcription	Hela-S3	cervix
3	chr1:94025600-94073800	Weak transcription	Fetal Brain Female	brain
4	chr1:94031800-94052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:94032000-94053600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:94033000-94050000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:94036400-94048600	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:94038400-94054000	Weak transcription	Brain Substantia Nigra	brain
9	chr1:94038400-94054800	Weak transcription	Brain Angular Gyrus	brain
10	chr1:94038600-94051800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:94038600-94054200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:94040000-94055000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:94041000-94049400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr1:94041200-94048800	Genic enhancers	HMEC	breast
15	chr1:94041800-94059400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:94042000-94054800	Weak transcription	Primary B cells from cord blood	blood
17	chr1:94042200-94048600	Enhancers	Pancreas	Pancrea
18	chr1:94042200-94063200	Weak transcription	Brain Germinal Matrix	brain
19	chr1:94042800-94050600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:94042800-94053000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:94043000-94058400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:94043200-94049800	Weak transcription	Fetal Kidney	kidney
23	chr1:94043200-94050400	Strong transcription	NHEK	skin
24	chr1:94044600-94049800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:94044800-94049600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:94045000-94050400	Genic enhancers	A549	lung
27	chr1:94045400-94050200	Weak transcription	Psoas Muscle	Psoas
28	chr1:94045400-94053600	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:94045600-94048400	Strong transcription	Stomach Smooth Muscle	stomach
30	chr1:94045600-94050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:94045800-94048400	Weak transcription	Small Intestine	intestine
32	chr1:94045800-94048600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:94045800-94049000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:94045800-94049000	Strong transcription	Adipose Nuclei	Adipose
35	chr1:94045800-94050000	Weak transcription	Right Atrium	heart
36	chr1:94045800-94050200	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr1:94046000-94049600	Strong transcription	Fetal Stomach	stomach
38	chr1:94046000-94049800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:94046000-94050200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr1:94046000-94050600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:94046000-94051600	Strong transcription	NH-A	brain
42	chr1:94046200-94048200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr1:94046200-94049000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr1:94046200-94049600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:94046400-94049000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:94046400-94050400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:94046600-94048200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr1:94046600-94050200	Weak transcription	HSMMtube	muscle
49	chr1:94046600-94058200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:94046800-94048200	Strong transcription	Fetal Lung	lung

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