Variant report

Variant	rs12063392
Chromosome Location	chr1:103573079-103573080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12088773	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830893	chr1:103458498-103635579	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103567400-103575000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:103570400-103573400	Active TSS	Brain Germinal Matrix	brain
3	chr1:103570400-103575200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:103571400-103573600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:103571400-103574600	Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr1:103571400-103574800	Active TSS	Fetal Brain Female	brain
7	chr1:103571600-103573200	Active TSS	NH-A	brain
8	chr1:103571600-103574600	Active TSS	HSMMtube	muscle
9	chr1:103571800-103573200	Active TSS	H1 Cell Line	embryonic stem cell
10	chr1:103571800-103574600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:103571800-103574600	Active TSS	Brain Hippocampus Middle	brain
12	chr1:103571800-103574800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr1:103571800-103574800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:103571800-103574800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:103571800-103575000	Active TSS	Brain Anterior Caudate	brain
16	chr1:103571800-103575000	Active TSS	HSMM	muscle
17	chr1:103571800-103575200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:103571800-103575200	Active TSS	Brain Angular Gyrus	brain
19	chr1:103571800-103575200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:103571800-103575600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr1:103572000-103573200	Active TSS	Colon Smooth Muscle	Colon
22	chr1:103572000-103573200	Active TSS	Fetal Brain Male	brain
23	chr1:103572000-103573200	Active TSS	Fetal Kidney	kidney
24	chr1:103572000-103573200	Active TSS	Stomach Smooth Muscle	stomach
25	chr1:103572000-103573400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:103572000-103573600	Active TSS	Brain Cingulate Gyrus	brain
27	chr1:103572000-103574000	Active TSS	NHLF	lung
28	chr1:103572000-103574400	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr1:103572000-103574600	Active TSS	Aorta	Aorta
30	chr1:103572000-103574600	Active TSS	Brain Substantia Nigra	brain
31	chr1:103572000-103574600	Active TSS	Right Atrium	heart
32	chr1:103572000-103574600	Active TSS	NHDF-Ad	bronchial
33	chr1:103572000-103574800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr1:103572000-103574800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:103572000-103574800	Active TSS	Fetal Heart	heart
36	chr1:103572000-103575000	Active TSS	H9 Cell Line	embryonic stem cell
37	chr1:103572000-103575200	Active TSS	A549	lung
38	chr1:103572200-103573400	Active TSS	Fetal Stomach	stomach
39	chr1:103572200-103573800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
40	chr1:103572200-103573800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
41	chr1:103572200-103574600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:103572200-103574800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:103572200-103574800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr1:103572200-103574800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr1:103572400-103573600	Enhancers	Placenta Amnion	Placenta Amnion
46	chr1:103572400-103574600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
47	chr1:103572600-103573200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:103572600-103573400	Active TSS	Muscle Satellite Cultured Cells	--
49	chr1:103572600-103573400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr1:103572600-103573400	Weak transcription	Fetal Lung	lung

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