Variant report

Variant	rs12064829
Chromosome Location	chr1:73449863-73449864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12089282	1.00[ASN][1000 genomes]
rs61772285	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61772333	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv945881	chr1:73446047-73452705	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73443000-73451200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:73443000-73451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:73446000-73451200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:73446600-73450400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
5	chr1:73448600-73450800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr1:73448600-73451200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr1:73448600-73451200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:73448800-73450400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:73449200-73451200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:73449200-73451400	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:73449400-73450000	Active TSS	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links