Variant report
| Variant | rs12065088 |
|---|---|
| Chromosome Location | chr1:179596359-179596360 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000057252 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10913820 | 0.85[AFR][1000 genomes] |
| rs10913852 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12064723 | 1.00[YRI][hapmap] |
| rs12066948 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs12069976 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs12071467 | 0.94[AFR][1000 genomes] |
| rs12074204 | 1.00[YRI][hapmap] |
| rs12075251 | 0.88[YRI][hapmap] |
| rs12082753 | 0.94[AFR][1000 genomes] |
| rs12086761 | 0.82[AFR][1000 genomes] |
| rs12094640 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6669671 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013000 | chr1:179589193-179628536 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
