Variant report

Variant	rs12065428
Chromosome Location	chr1:223703557-223703558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10907389	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10907390	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11261297	0.96[ASN][1000 genomes]
rs11261298	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11261299	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12061221	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12063812	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12066808	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12119080	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36169754	0.84[ASN][1000 genomes]
rs4539129	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56389919	0.83[ASN][1000 genomes]
rs73128182	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223700200-223704200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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