The 2.0 version of rSNPBase

Variant report

Variant rs12065459
Chromosome Location chr1:172788581-172788582
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172786400-172789400 Enhancers Primary Natural Killer cells fromperipheralblood blood
2 chr1:172786800-172789400 Enhancers Primary T killer naive cells fromperipheralblood blood
3 chr1:172787000-172789200 Enhancers Primary hematopoietic stem cells short term culture blood
4 chr1:172787200-172788600 Enhancers Adipose Nuclei Adipose
5 chr1:172787400-172788600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:172787400-172789000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr1:172787400-172789000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:172787400-172789400 Enhancers Primary hematopoietic stem cells blood
9 chr1:172787400-172793800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:172787600-172788600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:172787600-172788600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr1:172787600-172788600 Active TSS Duodenum Mucosa Duodenum
13 chr1:172787600-172788800 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
14 chr1:172787600-172789000 Enhancers Fetal Muscle Leg muscle
15 chr1:172787600-172789000 Enhancers Rectal Mucosa Donor 31 rectum
16 chr1:172787600-172789200 Enhancers Primary T cells from cord blood blood
17 chr1:172787600-172793800 Enhancers NHDF-Ad bronchial
18 chr1:172787800-172788600 Enhancers Brain Anterior Caudate brain
19 chr1:172787800-172788800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
20 chr1:172787800-172789000 Enhancers Primary monocytes fromperipheralblood blood
21 chr1:172787800-172789000 Enhancers Primary mononuclear cells fromperipheralblood Blood
22 chr1:172787800-172789000 Enhancers Monocytes-CD14+_RO01746 blood
23 chr1:172787800-172789200 Enhancers NHLF lung
24 chr1:172787800-172791200 Enhancers Osteobl bone
25 chr1:172788000-172788600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:172788000-172788600 Active TSS GM12878-XiMat blood
27 chr1:172788000-172788800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
28 chr1:172788000-172789000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
29 chr1:172788000-172789000 Enhancers Fetal Thymus thymus
30 chr1:172788000-172789200 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
31 chr1:172788000-172789200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
32 chr1:172788200-172788600 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
33 chr1:172788200-172788600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
34 chr1:172788200-172788600 Enhancers Muscle Satellite Cultured Cells --
35 chr1:172788200-172788600 Active TSS Rectal Mucosa Donor 29 rectum
36 chr1:172788200-172788600 Flanking Active TSS Dnd41 blood
37 chr1:172788200-172788800 Active TSS Primary T helper naive cells fromperipheralblood blood
38 chr1:172788400-172788600 Flanking Active TSS Primary B cells from peripheral blood blood
39 chr1:172788400-172788600 Enhancers HSMMtube muscle
40 chr1:172788400-172788800 Active TSS Primary T cells fromperipheralblood blood
41 chr1:172788400-172789000 Flanking Active TSS Primary B cells from cord blood blood
42 chr1:172788400-172789000 Active TSS Rectal Smooth Muscle rectum
43 chr1:172788400-172790200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:172788400-172790400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:172788400-172790400 Weak transcription K562 blood
46 chr1:172788400-172790600 Weak transcription Brain Hippocampus Middle brain
47 chr1:172788400-172793600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:172788400-172795400 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015