Variant report

Variant	rs1206560
Chromosome Location	chr7:121201292-121201293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121028768..121031547-chr7:121200681..121202494,2	K562	blood:
2	chr7:121171017..121172599-chr7:121198657..121201508,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10233243	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10237611	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10480752	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11982466	0.83[CHB][hapmap]
rs12535189	0.91[ASN][1000 genomes]
rs12540408	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12706358	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13229583	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1358498	0.95[CHB][hapmap];0.91[CHD][hapmap]
rs1528352	0.87[ASN][1000 genomes]
rs17132759	0.87[CHB][hapmap]
rs17143547	0.87[CHB][hapmap]
rs17143550	0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap]
rs1881374	0.84[ASN][1000 genomes]
rs1881375	0.80[ASN][1000 genomes]
rs1881376	0.80[ASN][1000 genomes]
rs2049701	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs2049702	0.93[ASW][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[MKK][hapmap];0.91[YRI][hapmap]
rs28485397	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28578522	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4145963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4727933	0.87[ASN][1000 genomes]
rs5000108	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs5000110	0.87[CHB][hapmap]
rs5000111	0.87[CHB][hapmap]
rs5000112	0.87[CHB][hapmap]
rs5000113	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs5000114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5000115	0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap]
rs5000116	0.86[CHB][hapmap]
rs6466797	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs6953922	0.85[ASN][1000 genomes]
rs736411	0.87[CHB][hapmap]
rs736412	0.87[CHB][hapmap]
rs7777295	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs7777787	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7791746	0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7793736	0.89[ASN][1000 genomes]
rs7795140	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9649443	0.90[ASN][1000 genomes]
rs9719308	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015438	chr7:121161554-121221761	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1206560	GPR37	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121197600-121202200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:121198200-121201800	Weak transcription	HSMM	muscle
3	chr7:121198200-121202000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:121201000-121201600	Weak transcription	Fetal Brain Female	brain
5	chr7:121201000-121202600	Enhancers	Fetal Brain Male	brain
6	chr7:121201200-121201400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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