Variant report

Variant	rs12065882
Chromosome Location	chr1:114078755-114078756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114056876..114059527-chr1:114077132..114079049,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10858004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11102660	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11802041	1.00[JPT][hapmap]
rs12026423	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1343126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114071000-114079800	Weak transcription	A549	lung
2	chr1:114072200-114095800	Weak transcription	Aorta	Aorta
3	chr1:114076000-114079800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:114076600-114078800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:114076600-114079200	Enhancers	NHEK	skin
6	chr1:114076600-114079400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:114076600-114080000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:114076800-114079400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:114077200-114079000	Weak transcription	NHLF	lung
10	chr1:114077200-114079800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:114077200-114079800	Weak transcription	Ovary	ovary
12	chr1:114077200-114081800	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:114077200-114082600	Weak transcription	Fetal Intestine Large	intestine
14	chr1:114077200-114082800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:114077400-114079400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:114077400-114080400	Enhancers	NHDF-Ad	bronchial
17	chr1:114077600-114083000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:114077800-114079800	Weak transcription	Pancreas	Pancrea
19	chr1:114077800-114080800	Weak transcription	Psoas Muscle	Psoas
20	chr1:114077800-114082400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:114077800-114082600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:114077800-114083000	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:114077800-114084400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:114077800-114084400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:114077800-114084400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:114078000-114090000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:114078200-114079000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:114078400-114079200	Enhancers	Osteobl	bone
29	chr1:114078400-114079400	Enhancers	NH-A	brain
30	chr1:114078600-114084200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:114078600-114084600	Weak transcription	HSMMtube	muscle

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