Variant report

Variant	rs12066306
Chromosome Location	chr1:169016230-169016231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169015675..169017491-chr1:169074337..169076638,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73030659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169011800-169017400	Weak transcription	Brain Substantia Nigra	brain
2	chr1:169011800-169017800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:169011800-169028800	Weak transcription	Psoas Muscle	Psoas
4	chr1:169012000-169017400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:169012000-169018200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:169012600-169017800	Enhancers	Duodenum Mucosa	Duodenum
7	chr1:169012800-169019400	Enhancers	GM12878-XiMat	blood
8	chr1:169013000-169018200	Enhancers	Stomach Mucosa	stomach
9	chr1:169013200-169018400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr1:169013800-169016600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:169014600-169016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:169014600-169016400	Weak transcription	Lung	lung
13	chr1:169014800-169016600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:169014800-169017400	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:169015000-169016600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr1:169015200-169017800	Enhancers	Fetal Intestine Small	intestine
17	chr1:169015200-169018200	Enhancers	Fetal Intestine Large	intestine
18	chr1:169015400-169016400	Weak transcription	Fetal Thymus	thymus
19	chr1:169015400-169016600	Enhancers	Dnd41	blood
20	chr1:169015400-169017400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:169015400-169021200	Weak transcription	Small Intestine	intestine
22	chr1:169016000-169016400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
23	chr1:169016000-169017000	Enhancers	Gastric	stomach
24	chr1:169016000-169017600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr1:169016200-169017600	Enhancers	Colonic Mucosa	Colon

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