Variant report

Variant	rs12066573
Chromosome Location	chr1:217260186-217260187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12073803	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217252000-217260800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:217252000-217261800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:217252000-217262000	Weak transcription	Pancreas	Pancrea
4	chr1:217253200-217261000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:217253200-217261800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:217255400-217260800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:217256600-217261600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:217257000-217260600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:217257000-217261400	Weak transcription	Fetal Intestine Large	intestine
10	chr1:217259600-217261800	Enhancers	Fetal Heart	heart
11	chr1:217259800-217260600	Weak transcription	Brain Anterior Caudate	brain
12	chr1:217260000-217260400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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