Variant report

Variant	rs12067109
Chromosome Location	chr1:173995738-173995739
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173989990..173993460-chr1:173995713..174001470,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135870	Chromatin interaction
ENSG00000224977	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10489892	1.00[EUR][1000 genomes]
rs10489893	1.00[EUR][1000 genomes]
rs10912693	1.00[EUR][1000 genomes]
rs10912699	1.00[EUR][1000 genomes]
rs10912700	1.00[EUR][1000 genomes]
rs10912701	0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912707	1.00[EUR][1000 genomes]
rs10912708	1.00[EUR][1000 genomes]
rs10912711	0.81[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10912712	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912725	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10912742	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs10912743	1.00[EUR][1000 genomes]
rs10912744	1.00[EUR][1000 genomes]
rs10912748	0.95[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912752	0.91[AMR][1000 genomes]
rs1135333	1.00[EUR][1000 genomes]
rs12057220	1.00[EUR][1000 genomes]
rs12057440	1.00[EUR][1000 genomes]
rs12058498	1.00[EUR][1000 genomes]
rs12059636	1.00[EUR][1000 genomes]
rs12060967	1.00[EUR][1000 genomes]
rs12061013	1.00[EUR][1000 genomes]
rs12062801	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063273	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12063296	0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064818	1.00[EUR][1000 genomes]
rs12065194	1.00[EUR][1000 genomes]
rs12067191	1.00[EUR][1000 genomes]
rs12068440	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069446	1.00[EUR][1000 genomes]
rs12070328	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12072553	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073448	1.00[EUR][1000 genomes]
rs12073453	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077462	1.00[EUR][1000 genomes]
rs12078222	1.00[EUR][1000 genomes]
rs12078471	1.00[EUR][1000 genomes]
rs12078645	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078817	1.00[EUR][1000 genomes]
rs12079240	1.00[EUR][1000 genomes]
rs12079274	1.00[EUR][1000 genomes]
rs12079650	1.00[EUR][1000 genomes]
rs12081595	1.00[EUR][1000 genomes]
rs12084213	1.00[EUR][1000 genomes]
rs12084911	1.00[EUR][1000 genomes]
rs12090507	1.00[EUR][1000 genomes]
rs12092291	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096013	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1322773	1.00[EUR][1000 genomes]
rs1322781	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1956522	1.00[EUR][1000 genomes]
rs2227611	1.00[EUR][1000 genomes]
rs2227622	1.00[EUR][1000 genomes]
rs57586767	1.00[EUR][1000 genomes]
rs59090917	1.00[EUR][1000 genomes]
rs6673147	1.00[EUR][1000 genomes]
rs6682041	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684147	1.00[EUR][1000 genomes]
rs74126415	1.00[EUR][1000 genomes]
rs7550107	1.00[EUR][1000 genomes]
rs874342	1.00[EUR][1000 genomes]
rs9425414	1.00[EUR][1000 genomes]
rs9425427	1.00[EUR][1000 genomes]
rs9425735	1.00[EUR][1000 genomes]
rs9425768	1.00[EUR][1000 genomes]
rs997165	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916960	chr1:173907804-174080248	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv872551	chr1:173913804-174025660	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173992200-173999800	Weak transcription	NHLF	lung
2	chr1:173992800-173997400	Weak transcription	Osteobl	bone
3	chr1:173992800-173997800	Weak transcription	Stomach Mucosa	stomach
4	chr1:173992800-173999800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:173993000-173996400	Weak transcription	K562	blood
6	chr1:173993000-173997200	Weak transcription	Fetal Lung	lung
7	chr1:173993000-173997600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:173993000-173997600	Weak transcription	Fetal Stomach	stomach
9	chr1:173993200-173997200	Weak transcription	Fetal Heart	heart
10	chr1:173993200-173999600	Weak transcription	A549	lung

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