Variant report

Variant	rs12067115
Chromosome Location	chr1:214770118-214770119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214769122..214772968-chr1:214776078..214778762,4	K562	blood:

Variant related genes	Relation type
ENSG00000117724	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10494982	0.85[AMR][1000 genomes]
rs11120362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11487824	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11804330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11806558	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12068412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736682	0.85[AMR][1000 genomes]
rs17736783	0.85[AMR][1000 genomes]
rs17792674	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2362215	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35222159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41277186	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56756772	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58019184	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58523012	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59120363	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61732042	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004475	chr1:214763778-215013375	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3386666	chr1:214769379-214771477	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv988434	chr1:214769403-214770531	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3321135	chr1:214769942-214770542	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3503926	chr1:214769957-214770549	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3409655	chr1:214769981-214770544	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3321137	chr1:214769983-214770506	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3503925	chr1:214769996-214770518	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3503927	chr1:214770008-214770505	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3321136	chr1:214770017-214770457	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3321134	chr1:214770024-214770510	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3321138	chr1:214770104-214770440	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3503928	chr1:214770104-214770440	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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