Variant report

Variant	rs12069209
Chromosome Location	chr1:57439339-57439340
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11206938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206939	1.00[ASN][1000 genomes]
rs11206943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11799770	1.00[CEU][hapmap]
rs12083335	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12083616	1.00[CEU][hapmap]
rs12085412	1.00[ASN][1000 genomes]
rs12354123	1.00[ASN][1000 genomes]
rs55666624	0.83[AMR][1000 genomes]
rs6684287	1.00[CEU][hapmap]
rs72903332	0.83[AMR][1000 genomes]
rs74074321	1.00[ASN][1000 genomes]
rs74074322	1.00[ASN][1000 genomes]
rs74074337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74074345	1.00[ASN][1000 genomes]
rs74074354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74074383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57434000-57445800	Weak transcription	Pancreas	Pancrea
2	chr1:57436400-57439800	Weak transcription	Liver	Liver
3	chr1:57437600-57439600	Weak transcription	HepG2	liver
4	chr1:57438400-57439400	Enhancers	NHDF-Ad	bronchial
5	chr1:57439200-57440000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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