Variant report

Variant	rs12069845
Chromosome Location	chr1:67429773-67429774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67389038..67391665-chr1:67429560..67431483,2	K562	blood:

Variant related genes	Relation type
ENSG00000152763	Chromatin interaction
ENSG00000198160	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11208970	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12083687	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12091598	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17097309	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2104414	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6671340	0.81[AFR][1000 genomes]
rs7528178	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871720	chr1:67357596-67435161	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67396800-67429800	Weak transcription	Pancreas	Pancrea
2	chr1:67396800-67458200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:67396800-67459000	Weak transcription	Esophagus	oesophagus
4	chr1:67397600-67457600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:67400600-67466600	Weak transcription	Aorta	Aorta
6	chr1:67405200-67431400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:67405600-67445400	Strong transcription	Fetal Thymus	thymus
8	chr1:67406200-67433000	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr1:67406400-67439200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr1:67406400-67455600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:67407000-67445400	Strong transcription	Dnd41	blood
12	chr1:67407600-67431200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:67408200-67448000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:67408200-67450200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr1:67409400-67446400	Weak transcription	Brain Angular Gyrus	brain
16	chr1:67409400-67447600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:67409600-67430400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:67410000-67431200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr1:67410400-67433000	Strong transcription	Duodenum Mucosa	Duodenum
20	chr1:67410600-67446400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr1:67410600-67453200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:67411000-67455000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr1:67411200-67431400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:67411200-67431800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:67411200-67433800	Strong transcription	Liver	Liver
26	chr1:67411200-67454800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:67411200-67456200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:67412800-67440600	Weak transcription	Psoas Muscle	Psoas
29	chr1:67413200-67432600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr1:67413400-67447000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr1:67413400-67456400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr1:67413600-67446400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:67414000-67432600	Weak transcription	Fetal Brain Male	brain
34	chr1:67414600-67462000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:67414800-67430600	Weak transcription	Fetal Brain Female	brain
36	chr1:67416400-67439000	Strong transcription	Primary B cells from cord blood	blood
37	chr1:67416600-67430800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:67416600-67446400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:67417000-67462000	Weak transcription	Right Ventricle	heart
40	chr1:67417400-67431400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:67417400-67446200	Strong transcription	HSMM	muscle
42	chr1:67418000-67446400	Strong transcription	Osteobl	bone
43	chr1:67418200-67447000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:67418400-67430200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:67418400-67433400	Strong transcription	NH-A	brain
46	chr1:67418600-67431400	Weak transcription	Left Ventricle	heart
47	chr1:67418600-67442800	Weak transcription	Spleen	Spleen
48	chr1:67419000-67440000	Weak transcription	Brain Germinal Matrix	brain
49	chr1:67420200-67444200	Weak transcription	Fetal Heart	heart
50	chr1:67420400-67430400	Weak transcription	A549	lung

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