The 2.0 version of rSNPBase

Variant report

Variant rs12071573
Chromosome Location chr1:98408619-98408620
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:98404000-98409000 Weak transcription Brain Substantia Nigra brain
2 chr1:98404200-98409000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr1:98404200-98409000 Weak transcription NHLF lung
4 chr1:98404600-98408800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr1:98407000-98410200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
6 chr1:98407200-98409000 Enhancers NHDF-Ad bronchial
7 chr1:98407200-98409600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
8 chr1:98407400-98409400 Enhancers Primary T helper naive cells fromperipheralblood blood
9 chr1:98407400-98409400 Enhancers Primary T helper cells fromperipheralblood blood
10 chr1:98407400-98409400 Enhancers Primary T regulatory cells fromperipheralblood blood
11 chr1:98407400-98409400 Enhancers Primary T killer memory cells from peripheral blood blood
12 chr1:98407400-98410800 Enhancers HUVEC blood vessel
13 chr1:98407600-98408800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr1:98407600-98409000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr1:98407600-98409200 Enhancers Primary T killer naive cells fromperipheralblood blood
16 chr1:98407800-98408800 Enhancers Brain Hippocampus Middle brain
17 chr1:98407800-98408800 Enhancers HMEC breast
18 chr1:98407800-98409000 Enhancers NH-A brain
19 chr1:98407800-98409400 Enhancers Primary hematopoietic stem cells short term culture blood
20 chr1:98407800-98409400 Enhancers Brain Cingulate Gyrus brain
21 chr1:98407800-98409400 Enhancers NHEK skin
22 chr1:98407800-98409800 Enhancers Primary T cells fromperipheralblood blood
23 chr1:98408000-98408800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:98408000-98408800 Flanking Active TSS Primary hematopoietic stem cells blood
25 chr1:98408000-98408800 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:98408000-98409000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:98408000-98409000 Enhancers Osteobl bone
28 chr1:98408000-98409400 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr1:98408200-98408800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:98408200-98409000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:98408200-98409400 Enhancers HSMM muscle
32 chr1:98408200-98409600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:98408400-98408800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:98408400-98408800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:98408400-98409000 Enhancers Muscle Satellite Cultured Cells --
36 chr1:98408400-98409200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:98408400-98409400 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr1:98408400-98409600 Enhancers Primary T cells from cord blood blood
39 chr1:98408400-98409600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr1:98408600-98409400 Enhancers Primary T helper cells PMA-I stimulated --
41 chr1:98408600-98410400 Enhancers Dnd41 blood

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Last update: Aug 31, 2015