Variant report

Variant	rs12072186
Chromosome Location	chr1:168438165-168438166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:168431347..168434389-chr1:168437766..168440799,3	MCF-7	breast:
2	chr1:168436511..168438790-chr1:168464783..168466920,2	MCF-7	breast:
3	chr1:168430768..168433415-chr1:168437699..168440443,2	K562	blood:

Variant related genes	Relation type
ENSG00000237658	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12069559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12075499	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12094971	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12564897	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs41489748	1.00[AMR][1000 genomes]
rs74120913	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947331	chr1:168436140-168440596	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168433800-168443400	Weak transcription	Liver	Liver
2	chr1:168434400-168443600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:168434800-168439200	Enhancers	Dnd41	blood
4	chr1:168434800-168440800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:168435000-168438400	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:168435000-168438400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:168435000-168439600	Enhancers	HSMMtube	muscle
8	chr1:168435000-168440400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:168435000-168440600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:168435000-168440600	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:168435200-168438200	Flanking Active TSS	GM12878-XiMat	blood
12	chr1:168435200-168439400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:168435200-168439800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:168435200-168439800	Enhancers	NHDF-Ad	bronchial
15	chr1:168435200-168440000	Enhancers	Primary T cells from cord blood	blood
16	chr1:168435200-168440200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:168435200-168440400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:168435200-168440400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:168435200-168440400	Enhancers	HSMM	muscle
20	chr1:168435200-168440600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:168435200-168440600	Enhancers	Colon Smooth Muscle	Colon
22	chr1:168435200-168440600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:168435200-168440600	Enhancers	HMEC	breast
24	chr1:168435200-168440600	Enhancers	NHEK	skin
25	chr1:168435200-168440800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:168435400-168439200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:168435400-168439800	Enhancers	Adipose Nuclei	Adipose
28	chr1:168435400-168439800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr1:168435400-168440600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:168435600-168439000	Weak transcription	Ovary	ovary
31	chr1:168435800-168438200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:168435800-168438200	Weak transcription	Left Ventricle	heart
33	chr1:168435800-168438200	Weak transcription	Pancreas	Pancrea
34	chr1:168435800-168438400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr1:168435800-168438600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:168435800-168451400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:168436000-168439800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr1:168436200-168438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:168436200-168438200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:168436200-168438800	Weak transcription	Fetal Lung	lung
41	chr1:168436200-168440000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr1:168436200-168440200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:168436400-168439000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:168436400-168439200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:168436400-168441400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr1:168436800-168438400	Enhancers	Psoas Muscle	Psoas
47	chr1:168436800-168438600	Enhancers	Stomach Smooth Muscle	stomach
48	chr1:168436800-168439200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr1:168436800-168439800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:168436800-168440000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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