Variant report
| Variant | rs12072625 |
|---|---|
| Chromosome Location | chr1:169727955-169727956 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:169727288..169729561-chr1:169762076..169765859,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000000460 | Chromatin interaction |
| ENSG00000171806 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs12063195 | 1.00[AMR][1000 genomes] |
| rs12065717 | 1.00[AMR][1000 genomes] |
| rs12080894 | 1.00[AMR][1000 genomes] |
| rs12086677 | 1.00[AMR][1000 genomes] |
| rs3917397 | 1.00[AMR][1000 genomes] |
| rs3917437 | 1.00[AMR][1000 genomes] |
| rs4987305 | 1.00[AMR][1000 genomes] |
| rs4987315 | 1.00[AMR][1000 genomes] |
| rs74125103 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3451367 | chr1:169630075-169976964 | Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
