Variant report

Variant	rs12072782
Chromosome Location	chr1:161009890-161009891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161007165..161010190-chr1:161058502..161060475,3	MCF-7	breast:
2	chr1:160989087..160991942-chr1:161007144..161014242,6	K562	blood:
3	chr1:160988819..160994033-chr1:161005548..161011188,8	MCF-7	breast:
4	chr1:161007064..161010778-chr1:161101040..161104167,3	MCF-7	breast:
5	chr1:160989495..160995605-chr1:161004888..161010340,15	MCF-7	breast:
6	chr1:160988071..160992174-chr1:161007125..161014242,7	K562	blood:
7	chr1:161005808..161012985-chr1:161064732..161070101,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158796	Chromatin interaction
ENSG00000162755	Chromatin interaction
ENSG00000143217	Chromatin interaction
ENSG00000158769	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv947201	chr1:161006051-161013276	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv548059	chr1:161007326-161010791	Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv3221	chr1:161008175-161052979	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv872492	chr1:161009523-161013152	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161007000-161013400	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:161007400-161013400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:161007400-161013400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:161007400-161013400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:161007400-161013400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:161007600-161013400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:161008000-161013200	Strong transcription	A549	lung
8	chr1:161008000-161013400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:161008200-161013000	Strong transcription	NHLF	lung
10	chr1:161008600-161011400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:161008800-161012600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:161008800-161013000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:161008800-161013400	Strong transcription	Brain Cingulate Gyrus	brain
14	chr1:161008800-161014000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:161009000-161010000	Genic enhancers	Colonic Mucosa	Colon
16	chr1:161009000-161010000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:161009000-161010000	Genic enhancers	Fetal Muscle Leg	muscle
18	chr1:161009000-161010000	Genic enhancers	Fetal Thymus	thymus
19	chr1:161009000-161010000	Weak transcription	Ovary	ovary
20	chr1:161009000-161010400	Genic enhancers	Spleen	Spleen
21	chr1:161009000-161011800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr1:161009000-161012400	Weak transcription	Psoas Muscle	Psoas
23	chr1:161009000-161012600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:161009000-161012800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:161009000-161012800	Strong transcription	Adipose Nuclei	Adipose
26	chr1:161009000-161013200	Strong transcription	Osteobl	bone
27	chr1:161009000-161013400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:161009000-161013400	Strong transcription	Fetal Stomach	stomach
29	chr1:161009000-161014000	Genic enhancers	Primary B cells from peripheral blood	blood
30	chr1:161009200-161010000	Genic enhancers	Primary B cells from cord blood	blood
31	chr1:161009200-161010000	Genic enhancers	Primary T cells from cord blood	blood
32	chr1:161009200-161010000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr1:161009200-161010000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
34	chr1:161009200-161010200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr1:161009200-161010200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr1:161009200-161010600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr1:161009200-161012400	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr1:161009200-161012600	Strong transcription	Colon Smooth Muscle	Colon
39	chr1:161009200-161012800	Strong transcription	Aorta	Aorta
40	chr1:161009200-161012800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr1:161009200-161013000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:161009200-161013000	Strong transcription	Brain Substantia Nigra	brain
43	chr1:161009200-161013000	Strong transcription	HSMMtube	muscle
44	chr1:161009200-161013000	Strong transcription	HUVEC	blood vessel
45	chr1:161009200-161013200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr1:161009200-161013200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:161009200-161013200	Strong transcription	Fetal Kidney	kidney
48	chr1:161009200-161013200	Strong transcription	Hela-S3	cervix
49	chr1:161009200-161013200	Strong transcription	HepG2	liver
50	chr1:161009200-161013200	Strong transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links