Variant report

Variant	rs12073835
Chromosome Location	chr1:197853128-197853129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10922325	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10922327	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593856	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60782452	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6703240	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999662	chr1:197821769-197892803	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv2762214	chr1:197821769-197897496	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv1004130	chr1:197822757-197879728	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197852200-197855200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:197853000-197853400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr1:197853000-197853400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:197853000-197853400	Flanking Active TSS	Liver	Liver
5	chr1:197853000-197853800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:197853000-197854000	Flanking Active TSS	HepG2	liver
7	chr1:197853000-197854000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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