The 2.0 version of rSNPBase

Variant report

Variant rs12075072
Chromosome Location chr1:217202672-217202673
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:217194800-217206200 Weak transcription Left Ventricle heart
2 chr1:217196000-217206200 Weak transcription Right Atrium heart
3 chr1:217196200-217206200 Weak transcription Brain Hippocampus Middle brain
4 chr1:217198600-217203200 Weak transcription Aorta Aorta
5 chr1:217199200-217204800 Enhancers Fetal Kidney kidney
6 chr1:217199600-217203800 Enhancers Fetal Intestine Large intestine
7 chr1:217199600-217206200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:217199600-217211800 Weak transcription Gastric stomach
9 chr1:217199800-217202800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:217199800-217203400 Enhancers Fetal Intestine Small intestine
11 chr1:217200000-217203600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr1:217200200-217203200 Weak transcription Pancreas Pancrea
13 chr1:217200400-217203000 Enhancers Primary hematopoietic stem cells blood
14 chr1:217200600-217204000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:217201000-217206000 Weak transcription Fetal Heart heart
16 chr1:217201600-217203400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:217201800-217203000 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr1:217201800-217203000 Weak transcription Brain Anterior Caudate brain
19 chr1:217201800-217204000 Enhancers Placenta Amnion Placenta Amnion
20 chr1:217201800-217205600 Weak transcription Brain Substantia Nigra brain
21 chr1:217202000-217203800 Enhancers HMEC breast
22 chr1:217202000-217203800 Enhancers NHEK skin
23 chr1:217202000-217204200 Enhancers Fetal Muscle Leg muscle
24 chr1:217202200-217203600 Enhancers Cortex derived primary cultured neurospheres brain
25 chr1:217202200-217203600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:217202200-217203600 Enhancers NH-A brain
27 chr1:217202400-217203000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:217202400-217203000 Enhancers Duodenum Mucosa Duodenum
29 chr1:217202400-217203200 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr1:217202400-217203400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:217202400-217203600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:217202400-217203800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:217202400-217203800 Enhancers Muscle Satellite Cultured Cells --
34 chr1:217202600-217203000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
35 chr1:217202600-217203000 Weak transcription Stomach Mucosa stomach
36 chr1:217202600-217203200 Enhancers Stomach Smooth Muscle stomach
37 chr1:217202600-217203400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:217202600-217203400 Enhancers Psoas Muscle Psoas
39 chr1:217202600-217203400 Enhancers Rectal Mucosa Donor 31 rectum
40 chr1:217202600-217203600 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015