Variant report

Variant	rs12075663
Chromosome Location	chr1:154722088-154722089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154506507..154507447-chr1:154721667..154722192,2	MCF-7	breast:
2	chr1:154721999..154724952-chr1:154768870..154770453,2	MCF-7	breast:
3	chr1:154641810..154642802-chr1:154721172..154722115,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163239	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12084283	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154704800-154723800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:154715800-154725200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:154717000-154732800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:154718000-154722200	Enhancers	Brain Anterior Caudate	brain
5	chr1:154718000-154727600	Weak transcription	Psoas Muscle	Psoas
6	chr1:154719400-154722800	Enhancers	Brain Substantia Nigra	brain
7	chr1:154719400-154722800	Enhancers	Fetal Brain Male	brain
8	chr1:154719600-154722400	Enhancers	HSMM	muscle
9	chr1:154719800-154722200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:154720600-154722200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:154720600-154722800	Enhancers	HSMMtube	muscle
12	chr1:154720600-154723200	Enhancers	Fetal Stomach	stomach
13	chr1:154720600-154724600	Enhancers	Fetal Muscle Leg	muscle
14	chr1:154720600-154731600	Weak transcription	Spleen	Spleen
15	chr1:154720800-154723800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:154720800-154726000	Enhancers	Fetal Thymus	thymus
17	chr1:154720800-154728800	Weak transcription	Lung	lung
18	chr1:154721000-154723400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:154721000-154724600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:154721000-154725000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:154721200-154722400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:154721200-154723000	Weak transcription	Fetal Brain Female	brain
23	chr1:154721200-154723800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:154721400-154722400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:154721400-154722400	Enhancers	Stomach Smooth Muscle	stomach
26	chr1:154721400-154722400	Enhancers	GM12878-XiMat	blood
27	chr1:154721400-154722400	Bivalent Enhancer	Osteobl	bone
28	chr1:154721400-154723600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:154721400-154723600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:154721400-154723800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:154721400-154724000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:154721600-154722200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr1:154721600-154723200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:154721600-154723800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr1:154721600-154728400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr1:154721800-154722200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:154721800-154722400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr1:154721800-154722400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:154721800-154722400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr1:154721800-154722600	Bivalent Enhancer	NHDF-Ad	bronchial
41	chr1:154721800-154723600	Weak transcription	Thymus	Thymus
42	chr1:154721800-154723800	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:154722000-154722200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr1:154722000-154722400	Bivalent/Poised TSS	Hela-S3	cervix
45	chr1:154722000-154723000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:154722000-154723000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr1:154722000-154723600	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:154722000-154724200	Weak transcription	Primary T cells from cord blood	blood

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