Variant report

Variant	rs12076176
Chromosome Location	chr1:104921048-104921049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11184156	0.81[EUR][1000 genomes]
rs11485422	0.82[ASN][1000 genomes]
rs11488075	0.82[ASN][1000 genomes]
rs11802923	0.82[ASN][1000 genomes]
rs12070214	0.82[ASN][1000 genomes]
rs12083514	0.83[EUR][1000 genomes]
rs12757630	0.82[ASN][1000 genomes]
rs12759315	0.95[ASN][1000 genomes]
rs1448377	0.81[EUR][1000 genomes]
rs1497672	0.81[EUR][1000 genomes]
rs17021474	0.95[ASN][1000 genomes]
rs34237409	0.82[ASN][1000 genomes]
rs35077289	0.81[ASN][1000 genomes]
rs35301362	0.82[ASN][1000 genomes]
rs56047647	0.85[EUR][1000 genomes]
rs61788255	0.82[ASN][1000 genomes]
rs6605224	0.92[ASN][1000 genomes]
rs6605225	0.92[ASN][1000 genomes]
rs6605226	0.92[ASN][1000 genomes]
rs6661997	0.85[EUR][1000 genomes]
rs7413869	0.91[ASN][1000 genomes]
rs7538850	0.92[ASN][1000 genomes]
rs9659643	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9660297	0.82[ASN][1000 genomes]
rs9661527	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2762170	chr1:104817700-105411596	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv872074	chr1:104844174-104922505	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv872075	chr1:104871518-104922505	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv872076	chr1:104871518-104952299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv547212	chr1:104890086-104946284	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv872077	chr1:104890559-104952299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv547213	chr1:104890559-104954365	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv872078	chr1:104890559-104997471	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv547214	chr1:104893852-104946284	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
12	nsv872079	chr1:104893852-104980964	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
13	nsv872080	chr1:104893852-104985647	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
14	nsv462851	chr1:104897848-104987416	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
15	nsv547215	chr1:104897848-104987416	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
16	nsv547216	chr1:104911326-104980964	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:104920800-104921400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:104920800-104921400	Enhancers	HMEC	breast

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