Variant report

Variant	rs12076595
Chromosome Location	chr1:57115674-57115675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10437072	1.00[AFR][1000 genomes]
rs11206904	1.00[AFR][1000 genomes]
rs12060663	0.92[AFR][1000 genomes]
rs12081693	1.00[AFR][1000 genomes]
rs12086954	1.00[AFR][1000 genomes]
rs12089982	0.89[AFR][1000 genomes]
rs3991779	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57112000-57117400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:57112000-57119800	Weak transcription	HUVEC	blood vessel
3	chr1:57112600-57121200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:57112600-57121800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:57113000-57122000	Weak transcription	Fetal Kidney	kidney
6	chr1:57114600-57116200	Weak transcription	HepG2	liver
7	chr1:57114600-57118200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:57115000-57115800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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