Variant report

Variant	rs12076606
Chromosome Location	chr1:225623526-225623527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12085514	0.94[ASN][1000 genomes]
rs7519130	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832714	chr1:225592333-225805396	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1004851	chr1:225614140-225684184	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225617400-225626600	Weak transcription	Dnd41	blood
2	chr1:225618400-225624600	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:225619600-225629000	Weak transcription	Spleen	Spleen
4	chr1:225621200-225625000	Enhancers	Thymus	Thymus
5	chr1:225621200-225626000	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:225621400-225624600	Enhancers	Fetal Thymus	thymus
7	chr1:225622400-225626000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:225623000-225623800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:225623000-225624800	Enhancers	K562	blood
10	chr1:225623000-225625400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:225623200-225623600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:225623400-225623600	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr1:225623400-225623600	Bivalent Enhancer	HepG2	liver
14	chr1:225623400-225624400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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