Variant report

Variant	rs1207729
Chromosome Location	chr7:96632990-96632991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:96629453-96654775	H1-neurons	neurons:	n/a	n/a
2	SUZ12	chr7:96630535-96633649	H1-hESC	embryonic stem cell:	n/a	n/a
3	TAF1	chr7:96632906-96633296	H1-neurons	neurons:	n/a	n/a
4	SUZ12	chr7:96631319-96633614	NT2-D1	testis:	n/a	n/a
5	POLR2A	chr7:96632983-96633941	K562	blood:	n/a	n/a
6	CTBP2	chr7:96631025-96633671	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr7:96628026-96649797	H1-neurons	neurons:	n/a	n/a
8	REST	chr7:96630994-96633107	H1-neurons	neurons:	n/a	n/a
9	REST	chr7:96624507-96656402	H1-neurons	neurons:	n/a	chr7:96626900-96626913 chr7:96628274-96628287 chr7:96653242-96653252 chr7:96638441-96638449 chr7:96644780-96644790 chr7:96627625-96627635 chr7:96628223-96628236 chr7:96655951-96655958 chr7:96625513-96625526 chr7:96635204-96635222 chr7:96634677-96634690 chr7:96628302-96628315 chr7:96652071-96652084 chr7:96650634-96650647 chr7:96628298-96628318 chr7:96628298-96628318

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLX5-2	chr7:96632821-96633610	ENSG00000231764.2
2	lnc-DLX5-2	chr7:96632821-96633610	ENSG00000231764.4

Variant related genes	Relation type
DLX6	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6951996	0.84[AFR][1000 genomes]
rs982346	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv967466	chr7:96630712-96634026	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96625000-96644000	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr7:96626000-96633800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:96626200-96633200	Weak transcription	Pancreas	Pancrea
4	chr7:96627400-96634800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:96628000-96643200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
6	chr7:96628400-96634000	Weak transcription	HepG2	liver
7	chr7:96631200-96634200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr7:96631600-96633200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:96631600-96633800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
10	chr7:96631800-96633600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr7:96632000-96633600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:96632000-96634000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:96632200-96633600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr7:96632400-96633000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr7:96632400-96633600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:96632400-96633800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr7:96632600-96633200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:96632600-96634400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:96632800-96633000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
20	chr7:96632800-96633200	Bivalent Enhancer	Fetal Heart	heart
21	chr7:96632800-96633200	Flanking Bivalent TSS/Enh	Placenta	Placenta
22	chr7:96632800-96633600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr7:96632800-96633600	Bivalent Enhancer	Brain Hippocampus Middle	brain
24	chr7:96632800-96633600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr7:96632800-96634400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood

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