Variant report

Variant	rs12077440
Chromosome Location	chr1:217005689-217005690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1436896	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1436897	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:217003200-217007200	Enhancers	Fetal Heart	heart
3	chr1:217004400-217005800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:217004400-217006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:217004800-217008400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:217005200-217005800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:217005400-217005800	Enhancers	Brain Anterior Caudate	brain
9	chr1:217005600-217006000	Enhancers	Fetal Stomach	stomach
10	chr1:217005600-217009800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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