Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493846	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10801861	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10923009	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11164779	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11165744	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11484907	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11487638	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1158437	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11584478	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11588502	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11589490	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12060327	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12077563	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12080491	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12094120	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1978902	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1978903	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2119251	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28445469	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56110253	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56355433	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56382425	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9324415	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91749000-91774600	Weak transcription	Ovary	ovary
2	chr1:91752400-91762200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:91753200-91755000	Weak transcription	Fetal Stomach	stomach
4	chr1:91754200-91755000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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