Variant report

Variant	rs12077877
Chromosome Location	chr1:179098811-179098812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179097406..179100383-chr1:179127242..179129431,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012667	chr1:179094571-179120280	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002253	chr1:179094571-179120938	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1001191	chr1:179097246-179120938	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179063200-179112000	Weak transcription	Fetal Kidney	kidney
2	chr1:179079600-179109800	Weak transcription	Small Intestine	intestine
3	chr1:179080200-179101600	Weak transcription	Fetal Brain Male	brain
4	chr1:179080400-179103800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:179080800-179099000	Weak transcription	Colonic Mucosa	Colon
6	chr1:179080800-179099000	Weak transcription	Spleen	Spleen
7	chr1:179086600-179105000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:179086800-179099000	Weak transcription	Right Ventricle	heart
9	chr1:179087800-179113000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:179088000-179099000	Weak transcription	Aorta	Aorta
11	chr1:179088200-179102400	Weak transcription	Brain Germinal Matrix	brain
12	chr1:179088400-179099200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:179088400-179099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:179089200-179099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:179089600-179099000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:179090800-179099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:179090800-179104400	Weak transcription	Fetal Brain Female	brain
18	chr1:179091000-179108800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:179091000-179109000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:179091000-179109200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:179093400-179117200	Weak transcription	Fetal Stomach	stomach
22	chr1:179093600-179099000	Genic enhancers	Muscle Satellite Cultured Cells	--
23	chr1:179093800-179099000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:179093800-179099600	Genic enhancers	HMEC	breast
25	chr1:179094000-179099600	Genic enhancers	Osteobl	bone
26	chr1:179094400-179099600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:179095200-179099800	Genic enhancers	NHEK	skin
28	chr1:179095600-179101000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:179095800-179099000	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:179095800-179099400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:179095800-179100800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:179095800-179101800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:179095800-179103600	Weak transcription	Fetal Intestine Large	intestine
34	chr1:179095800-179106800	Weak transcription	Gastric	stomach
35	chr1:179095800-179107400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr1:179096000-179099000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:179096400-179108800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:179096600-179106800	Weak transcription	Fetal Lung	lung
39	chr1:179096600-179110200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:179096800-179099400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:179097000-179101600	Genic enhancers	HUVEC	blood vessel
42	chr1:179097600-179099400	Enhancers	Stomach Mucosa	stomach
43	chr1:179097800-179099000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr1:179097800-179099000	Enhancers	Pancreas	Pancrea
45	chr1:179097800-179099200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr1:179097800-179099400	Enhancers	Primary B cells from cord blood	blood
47	chr1:179097800-179099400	Genic enhancers	Left Ventricle	heart
48	chr1:179097800-179099600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:179097800-179099600	Enhancers	Primary B cells from peripheral blood	blood
50	chr1:179097800-179099800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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