Variant report

Variant	rs1207893
Chromosome Location	chr7:78392534-78392535
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10277568	1.00[CEU][hapmap]
rs11974392	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1207869	1.00[CEU][hapmap]
rs1207878	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1207880	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1207883	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs323131	0.88[EUR][1000 genomes]
rs415085	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6466335	1.00[CEU][hapmap]
rs66495	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs66496	0.88[EUR][1000 genomes]
rs6980006	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs727537	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
2	chr7:78381200-78393200	Weak transcription	Fetal Heart	heart
3	chr7:78381200-78393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:78386200-78397600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:78388400-78395200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:78390400-78393600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:78391000-78395400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:78391800-78398800	Weak transcription	Pancreas	Pancrea
9	chr7:78392000-78394200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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