The 2.0 version of rSNPBase

Variant report

Variant rs12079004
Chromosome Location chr1:172814470-172814471
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172808200-172814600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:172813000-172814600 Weak transcription HUES6 Cell Line embryonic stem cell
3 chr1:172813000-172819200 Weak transcription HUVEC blood vessel
4 chr1:172813600-172814600 Enhancers Stomach Mucosa stomach
5 chr1:172813600-172815000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:172813600-172815200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
7 chr1:172813600-172815400 Enhancers Primary T helper naive cells from peripheral blood blood
8 chr1:172813600-172815400 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr1:172813600-172815600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
10 chr1:172813600-172815800 Enhancers Primary T helper 17 cells PMA-I stimulated --
11 chr1:172813800-172814800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:172813800-172815400 Enhancers Primary T cells from cord blood blood
13 chr1:172813800-172815400 Enhancers Primary T helper cells fromperipheralblood blood
14 chr1:172813800-172815400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:172813800-172815400 Enhancers Dnd41 blood
16 chr1:172813800-172815600 Enhancers Primary T helper cells PMA-I stimulated --
17 chr1:172813800-172815800 Enhancers Primary T helper naive cells fromperipheralblood blood
18 chr1:172814200-172815000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:172814200-172815000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
20 chr1:172814200-172815200 Enhancers Primary T killer memory cells from peripheral blood blood
21 chr1:172814200-172815600 Enhancers Primary T cells fromperipheralblood blood
22 chr1:172814200-172815600 Enhancers Fetal Thymus thymus
23 chr1:172814400-172814600 Enhancers Breast Myoepithelial Primary Cells Breast
24 chr1:172814400-172814800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:172814400-172814800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr1:172814400-172814800 Enhancers Primary hematopoietic stem cells short term culture blood
27 chr1:172814400-172814800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:172814400-172814800 Enhancers Adipose Nuclei Adipose
29 chr1:172814400-172814800 Enhancers Fetal Muscle Leg muscle
30 chr1:172814400-172814800 Enhancers Placenta Placenta
31 chr1:172814400-172814800 Enhancers Rectal Mucosa Donor 31 rectum
32 chr1:172814400-172814800 Enhancers Small Intestine intestine
33 chr1:172814400-172814800 Enhancers Thymus Thymus
34 chr1:172814400-172814800 Enhancers K562 blood
35 chr1:172814400-172815000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:172814400-172815000 Enhancers Primary Natural Killer cells fromperipheralblood blood
37 chr1:172814400-172815000 Enhancers Muscle Satellite Cultured Cells --
38 chr1:172814400-172815000 Enhancers HMEC breast
39 chr1:172814400-172815000 Enhancers HSMMtube muscle
40 chr1:172814400-172815000 Enhancers Osteobl bone

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Last update: Aug 31, 2015