Variant report

Variant	rs12079661
Chromosome Location	chr1:94456567-94456568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12062935	0.85[ASN][1000 genomes]
rs12070195	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94445800-94457200	Weak transcription	Right Atrium	heart
2	chr1:94446200-94463400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:94452400-94463800	Enhancers	HMEC	breast
4	chr1:94452800-94462400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:94452800-94464000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:94453600-94457800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:94454400-94457000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:94454800-94457800	Weak transcription	Liver	Liver
9	chr1:94455400-94459200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:94455800-94457800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:94455800-94458600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:94456000-94458200	Weak transcription	NHEK	skin
13	chr1:94456000-94458600	Weak transcription	HSMMtube	muscle
14	chr1:94456000-94458600	Weak transcription	NH-A	brain
15	chr1:94456000-94459000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:94456200-94456600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr1:94456200-94456600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr1:94456200-94458600	Weak transcription	HSMM	muscle
19	chr1:94456200-94458600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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