Variant report

Variant	rs12080209
Chromosome Location	chr1:172956029-172956030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10912515	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12064861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077975	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083030	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086143	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090211	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091698	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901695	0.82[AFR][1000 genomes]
rs59117740	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61449314	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548474	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7552799	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172947200-172959000	Weak transcription	HSMM	muscle
2	chr1:172956000-172956400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:172956000-172956400	Active TSS	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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