Variant report

Variant	rs12080233
Chromosome Location	chr1:57658178-57658179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11206995	0.80[EUR][1000 genomes]
rs11206997	0.83[CEU][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs12040107	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs12042042	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs149766	0.80[CEU][hapmap];1.00[MEX][hapmap]
rs17115341	0.83[CEU][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs1847537	0.80[EUR][1000 genomes]
rs72672689	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12080233	SIRPG	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57647000-57670600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57656800-57659000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:57657400-57658400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:57657400-57670200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:57658000-57658400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:57658000-57663800	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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