Variant report

Variant	rs12082110
Chromosome Location	chr1:171611054-171611055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10913371	0.84[YRI][hapmap]
rs10913374	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs12075365	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs6698607	0.94[YRI][hapmap]
rs929115	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv528322	chr1:171578532-171612267	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv548191	chr1:171578532-171612267	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171605800-171614400	Weak transcription	Aorta	Aorta
2	chr1:171607800-171612400	Weak transcription	Adipose Nuclei	Adipose
3	chr1:171607800-171614000	Weak transcription	HepG2	liver
4	chr1:171609400-171611200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:171609600-171612400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:171609800-171611600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:171610000-171611200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr1:171610000-171611400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:171610000-171611400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:171610000-171614000	Weak transcription	Spleen	Spleen
11	chr1:171610400-171611600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:171610600-171611400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:171610600-171611400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:171610600-171611600	Enhancers	Liver	Liver
15	chr1:171610800-171611200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr1:171610800-171611200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr1:171610800-171611200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr1:171610800-171611200	Enhancers	Stomach Smooth Muscle	stomach
19	chr1:171610800-171611400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:171610800-171614000	Weak transcription	Ovary	ovary
21	chr1:171610800-171614200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:171611000-171611400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr1:171611000-171611400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr1:171611000-171614000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:171611000-171614600	Enhancers	Primary neutrophils fromperipheralblood	blood

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